MOMD:
Mouse Oral Microbiome Database
Home
Taxonomy
Genomics
Tools
16S rRNA Gene Idnetification
BLAST Search Genomes
Download
Publication
MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
Genome Viewer
PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
Quick search
:
Match all words
Match any words
Match exact phrase
Partially
In whole field
(leave empty to show all)
PROKKA Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 4,826
rRNA: 10
Repeat region:
tmRNA: 1
tRNA: 89
misc RNA:
Total features: 4,926
Total number of protein coding genes annotated/found:
4,826
Display
20
50
100
All items per page
Items 1 - 20
🡆
click arrow to navigate by page or
of 242 pages
Molecule
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5015|JADGKR010000031.1
SEQF5015_02527
Genome Viewer
NA
AA
870/290
1137-268
hypothetical protein
SEQF5015|JADGKR010000031.1
SEQF5015_02528
Genome Viewer
NA
AA
1029/343
2555-1527
L-lysine 2%2C3-aminomutase
SEQF5015|JADGKR010000031.1
SEQF5015_02529
Genome Viewer
NA
AA
567/189
2597-3163
Elongation factor P
SEQF5015|JADGKR010000031.1
SEQF5015_02530
Genome Viewer
NA
AA
126/42
3215-3340
hypothetical protein
SEQF5015|JADGKR010000031.1
SEQF5015_02531
Genome Viewer
NA
AA
147/49
3451-3597
hypothetical protein
SEQF5015|JADGKR010000031.1
SEQF5015_02532
Genome Viewer
NA
AA
318/106
3779-4096
Guanidinium exporter
SEQF5015|JADGKR010000031.1
SEQF5015_02533
Genome Viewer
NA
AA
534/178
4626-4093
Outer membrane lipoprotein Blc
SEQF5015|JADGKR010000031.1
SEQF5015_02534
Genome Viewer
NA
AA
1134/378
5848-4715
Beta-lactamase
SEQF5015|JADGKR010000031.1
SEQF5015_02535
Genome Viewer
NA
AA
360/120
6270-5911
Fumarate reductase subunit D
SEQF5015|JADGKR010000031.1
SEQF5015_02536
Genome Viewer
NA
AA
396/132
6676-6281
Fumarate reductase subunit C
SEQF5015|JADGKR010000031.1
SEQF5015_02537
Genome Viewer
NA
AA
735/245
7421-6687
Fumarate reductase iron-sulfur subunit
SEQF5015|JADGKR010000031.1
SEQF5015_02538
Genome Viewer
NA
AA
1809/603
9222-7414
Fumarate reductase flavoprotein subunit
SEQF5015|JADGKR010000031.1
SEQF5015_02539
Genome Viewer
NA
AA
978/326
9547-10524
Elongation factor P--(R)-beta-lysine ligase
SEQF5015|JADGKR010000031.1
SEQF5015_02540
Genome Viewer
NA
AA
1458/486
10788-12245
Inner membrane transporter YjeM
SEQF5015|JADGKR010000031.1
SEQF5015_02541
Genome Viewer
NA
AA
315/105
12297-12611
hypothetical protein
SEQF5015|JADGKR010000031.1
SEQF5015_02542
Genome Viewer
NA
AA
303/101
12620-12922
Inner membrane protein YjeO
SEQF5015|JADGKR010000031.1
SEQF5015_02543
Genome Viewer
NA
AA
3324/1108
16274-12951
Miniconductance mechanosensitive channel MscM
SEQF5015|JADGKR010000031.1
SEQF5015_02544
Genome Viewer
NA
AA
969/323
17264-16296
Phosphatidylserine decarboxylase proenzyme
SEQF5015|JADGKR010000031.1
SEQF5015_02545
Genome Viewer
NA
AA
1053/351
18413-17361
Small ribosomal subunit biogenesis GTPase RsgA
SEQF5015|JADGKR010000031.1
SEQF5015_02546
Genome Viewer
NA
AA
546/182
18508-19053
Oligoribonuclease
Items 1 - 20
🡆
click arrow to navigate by page or
of 242 pages
Genome Viewer
JBrowse Genome Viewer
* Click GI, UID, Gene Product to go to NCBI record
^ Click column names to toggle sorting
Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
Powered by
